Preprints
Robust and Versatile Arrayed Libraries for Human Genome-Wide CRISPR Activation, Deletion and Silencing
Yin, J.-A., Scheidmann, M. C., Frick, L., Trevisan, C., Dhingra, A., Spinelli, A., Wu, Y., Yao, L., Vena, D.L., De Cecco, E., Ging, K., Liu, T., Täger, J., Rodriguez, S., Guo, J., Berry, S., Losa, M., Hornemann, S., Kampmann, M., Pelkmans, L., Hoepfner, D., Heutink, P., and Aguzzi, A.
bioRxiv
| PDF
| bioRxiv
2024
Global control of RNA polymerase II
Gillis, A., and Berry, S.
BBA Gene Regulatory Mechanisms
| PDF
| Journal
2023
Integrating analog and digital modes of gene expression at Arabidopsis FLC
Antoniou-Kourounioti, R.L.*, Meschichi, A.*, Reeck, S.*, Berry, S., Menon, G., Zhao, Y., Fozard, J., Holmes, T., Zhao, L., Wang, H., Hartley, M., Dean, C., Rosa, S., Howard, M.
eLife
| PDF
| Journal
| bioRxiv
* Equal contribution
Learning consistent subcellular landmarks to quantify changes in multiplexed protein maps
Spitzer, H.*, Berry, S.*, Donoghoe, M., Pelkmans, L. and Theis, F.
Nature Methods
| PDF
| Journal
| Research Briefing
| bioRxiv
| GitHub
| Read the Docs
* Equal contribution
2022
Mechanisms of cellular mRNA transcript homeostasis
Berry, S., and Pelkmans, L.
Trends in Cell Biology
| Journal
Berry, S.^, Müller, M., Rai, A. and Pelkmans, L.^
Cell Systems
| PDF
| Journal
| bioRxiv
^ Corresponding authors
2021
High content genome-wide siRNA screen to investigate the coordination of cell size and RNA production
Müller, M., Avar, M., Heinzer, D., Emmenegger, M., Aguzzi, A., Pelkmans, L.^, and Berry, S.^
Scientific Data
| PDF
| Journal
| Data
^ Corresponding authors
2017
Berry, S., Rosa, S., Howard, M., Bühler, M., and Dean, C.
Genes & Development
| PDF
| Journal
Slow Chromatin Dynamics Allow Polycomb Target Genes to Filter Fluctuations in Transcription Factor Activity
Berry, S., Dean, C., and Howard, M.
Cell Systems
| PDF
| Supplementary
| Journal
| Commentary
Distinct phases of Polycomb silencing to hold epigenetic memory of cold in Arabidopsis
Yang, H.*, Berry, S.*, Olsson, T.S.G., Hartley, M., Howard, M., and Dean, C.
Science
| PDF (accepted version)
| Journal
* Equal contribution
2015
Local chromatin environment of a Polycomb target gene instructs its own epigenetic inheritance
Berry, S., Hartley, M., Olsson, T.S.G., Dean, C., and Howard, M.
eLife
| PDF
| Journal
Environmental perception and epigenetic memory: mechanistic insight through FLC
Berry, S., and Dean, C.
The Plant Journal
| PDF
| Journal
2014
Lipopolysaccharide O antigen size distribution is determined by a chain extension complex of variable stoichiometry in Escherichia coli O9a
King, J.D.*, Berry, S.*, Clarke, B.R., Morris, R.J., and Whitfield, C.
Proceedings of the National Academy of Sciences
| PDF
| Supplementary
| Journal
* Equal contribution
2012
Illustrations of Mathematical Modeling in Biology: Epigenetics, Meiosis, and an Outlook
Richards, D.*, Berry, S.*, and Howard, M.
Cold Spring Harbor Symposia on Quantitative Biology
| PDF
| Journal
* Equal contribution
2011
qwViz: Visualisation of quantum walks on graphs
Berry, S.D., Bourke, P., and Wang, J.B.
Computer Physics Communications
| Journal
Two-particle quantum walks: Entanglement and graph isomorphism testing
Berry, S.D., and Wang, J.B.
Physical Review A
| Journal
2010
Quantum-walk-based search and centrality
Berry, S.D., and Wang, J.B.
Physical Review A
| arXiv
| Journal